Version 1.36, 2015-03-05

Major changes: * None.

Minor changes: * Added a function flip.order() for flipping the order of markers on selected chromosomes. * Added scanonevar.meanperm and scanonevar.varperm (from Robert Corty) for permutation tests with scanonevar(). * Revised plotPheno (aka plot.pheno) so that one can control the x-axis label and title (also, in a histogram, the breaks). * plotPXG: if infer=FALSE and there are no fully-informative genotypes (e.g., in a 4-way cross), give a more informative error. * geno.image: allow control of x- and y-axis labels; allow suppression of axes. * Removed some warnings about missing end-of-line characters, in read.cross with MapQTL format. * Fixed a bug in scanonevar; was failing with an error about coercing class "A" to a data.frame * Dropped the name summary.scantwo.old(); still available as summaryScantwoOld().