FEDORA-2018-80bb15c1c5 created by yalgaer 2 years ago for Fedora 28
obsolete

The new version introduces a lot of major features for NGS data analysis:

  1. Quality control: a new tool Trimmomatic was integrated for quality control of NGS reads. It allows one to cut Illumina adapters, trim reads ends by quality, trim reads by length, etc.

  2. De novo assembly: SPAdes was updated to version 3.12.0. Graphical interface for the tool in UGENE was updated. It is now possible to input hybrid data, for example, assemble Illumina and Oxford Nanopore reads.

  3. Metagenomics: a new infrastructure for taxonomy classification of whole-genome shotgun sequencing data was developed. This includes tools Kraken, CLARK, DIAMOND, WEVOTE and other. Reference data for the tools are also provided: NCBI taxonomy information; RefSeq data for viruses, bacteria, human; etc.

  4. Transcriptomics: a new tool StringTie was integrated.

This update has been submitted for testing by yalgaer.

2 years ago

This update has been pushed to testing.

2 years ago

This update has been obsoleted by ugene-1.31.0-3.fc28.

2 years ago
User Icon lobocode commented & provided feedback 2 years ago
karma

works


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Metadata
Type
enhancement
Karma
1
Signed
Content Type
RPM
Test Gating
Settings
Unstable by Karma
-3
Stable by Karma
3
Stable by Time
disabled
Dates
submitted
2 years ago
in testing
2 years ago

Automated Test Results