snakemake

Depend on python-unversioned-command, improving the situation with respect to remote execution. Run tests the way upstream expects, thereby running many more tests.

8.18.0 (2024-08-14)

Features

• show info on missing metadata

Performance Improvements

• cache mtime of scripts and notebooks

8.17.0 (2024-08-13)

Features

• fix job rate limiting with --max-jobs-per-second and introduce the more flexible --max-jobs-per-timespan

Bug Fixes

• Allow hyphens in config keys given on the command line.
• allowing trailing '+' in name patterns
• print message if not yet enough resources for executing further jobs
• unawaited coroutine sanitize_local_storage_copies

Documentation

• Change sha256 checksum in docs to more realistic example
• Make it more clear that the cluster commands now require a plugin
• Update installation.rst to recommend Miniforge instead of Mambaforge
• use plain monospace font instead of theme default that changes >= into ≥

python-snakemake-interface-common

1.17.3 (2024-08-14)

Bug Fixes

• set CLI arg type to str if parse_func is provided

Documentation

• insert space between original help message and suffix

python-snakemake-interface-storage-plugins

3.2.4 (2024-08-14)

Bug Fixes

• in test suite, check that filepath exists after retrieval

python-snakemake-storage-plugin-s3

0.2.12 (2024-08-14)

Bug Fixes

• allow boto3 to automatically refresh credentials
• fix retrieval of nested directories