stable

python-snakemake-executor-plugin-kubernetes-0.2.0-1.fc40, python-snakemake-executor-plugin-slurm-0.10.0-1.fc40, & 5 more

FEDORA-2024-2f70f60492 created by music a year ago for Fedora 40

python-snakemake-executor-plugin-kubernetes 0.2.0 (2024-08-15)

Features

  • PVC support for kubernetes

Bug Fixes

  • handle cases when running inside a kubernetes cluster

python-snakemake-executor-plugin-slurm 0.10.0 (2024-08-23)

Features

  • in job stability

Bug Fixes

  • add --parsable to sbatch call for a more robust output parsing
  • issue #109 - preemption is no longer considered a failed status

python-snakemake-interface-storage-plugins 3.3.0 (2024-08-19)

Features

  • add postprocess_query method for optionally modifying the query before a storage object is created

python-snakemake-storage-plugin-fs 1.0.6 (2024-08-16)

Bug Fixes

  • clean up target path upon storage in order to avoid merges of directories

python-snakemake-storage-plugin-gcs 1.1.1 (2024-08-19)

Bug Fixes

  • allow both gs:// and gcs:// as query scheme; internally normalize to gs:// for compatibility with google cloud tools

python-snakemake-storage-plugin-gcs 1.1.0 (2024-08-19)

Features

  • list storage candidates

Bug Fixes

  • fixing the directory() issue due to uploading the local_prefix instead of GCS prefix.

python-snakemake-storage-plugin-xrootd 0.1.3 (2024-08-20)

Bug Fixes

  • Fix XRootD storage plugin at least for file access
  • update dependencies

snakemake 8.18.2 (2024-08-21)

Documentation

  • recommending raw strings to get rid of syntax warnings
  • tutorial polishing

snakemake 8.18.1 (2024-08-19)

Bug Fixes

  • use query from storage object in order to be able to reflect possible modifications (via StorageProvider.postprocess_query())

Documentation

  • clarify config file location

How to install

Updates may require up to 24 hours to propagate to mirrors. If the following command doesn't work, please retry later:

sudo dnf upgrade --refresh --advisory=FEDORA-2024-2f70f60492

This update's test gating status has been changed to 'waiting'.

a year ago

This update's test gating status has been changed to 'ignored'.

a year ago

This update has been submitted for testing by bodhi.

a year ago

This update has been pushed to testing.

a year ago

music edited this update.

New build(s):

  • python-snakemake-storage-plugin-fs-1.0.6-1.fc40
  • python-snakemake-executor-plugin-kubernetes-0.2.0-1.fc40
  • python-snakemake-storage-plugin-gcs-1.1.1-2.fc40
  • snakemake-8.18.2-2.fc40

Karma has been reset.

a year ago

This update has been submitted for testing by music.

a year ago

This update has been pushed to testing.

a year ago

music edited this update.

New build(s):

  • python-snakemake-executor-plugin-slurm-0.10.0-1.fc40

Karma has been reset.

a year ago

This update has been submitted for testing by music.

a year ago

This update has been pushed to testing.

a year ago

This update has been submitted for stable by bodhi.

a year ago

This update has been pushed to stable.

a year ago

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Metadata
Type
bugfix
Karma
0
Signed
Content Type
RPM
Test Gating
Autopush Settings
Unstable by Karma
-3
Stable by Karma
3
Stable by Time
7 days
Dates
submitted
a year ago
in testing
a year ago
in stable
a year ago
modified
a year ago
approved
a year ago
BZ#2306485 python-snakemake-storage-plugin-xrootd-0.1.3 is available
0
0
BZ#2306508 python-snakemake-interface-storage-plugins-3.3.0 is available
0
0
BZ#2307479 python-snakemake-executor-plugin-kubernetes-0.2.0 is available
0
0
BZ#2307480 snakemake-8.18.2 is available
0
0
BZ#2307481 python-snakemake-storage-plugin-gcs-1.1.1 is available
0
0
BZ#2307482 python-snakemake-storage-plugin-fs-1.0.6 is available
0
0
BZ#2307734 python-snakemake-executor-plugin-slurm-0.10.0 is available
0
0

Automated Test Results