stable

python-snakemake-storage-plugin-fs-1.0.4-1.fc40, python-snakemake-storage-plugin-gcs-1.0.0-1.fc40, & 1 more

FEDORA-2024-426625788f created by music a month ago for Fedora 40

snakemake

8.11.3 (2024-05-03)

Bug Fixes

  • ignore errors when cleaning up runtime cache
  • show queries of remote storage files instead of local paths in summary

8.11.2 (2024-05-02)

Bug Fixes

  • bug when requesting extended benchmark with slurm

8.11.1 (2024-04-29)

Bug Fixes

  • check template rendering output for leaked input file paths
  • do not distinguish between local and remote rules in dryrun
  • omit norun jobs when determining remote storage input file retrieval
  • Prevent binary log files to crash snakemake execution with show-failed-logs
  • replace pkg_resources for python 3.12
  • return set instead of list when just --quiet
  • small typo in error
  • use keyword arguments in _IOFile.open

Documentation

  • fix typo and link for RO Crate

8.11.0 (2024-04-25)

Features

  • allow for more extensive benchmark file in jsonl format

Bug Fixes

  • only download input for local jobs in the main process, not within remote groups
  • remove non-empty local copies of remote storage dirs
  • retrieve files from storage if necessary when calling their open method (e.g. when accessing output files from a checkpoint)

8.10.8 (2024-04-19)

Bug Fixes

  • extend workflow test suite by wildcards with slashes (in order to detect bugs that can occur in executors)
  • invalid extensions with multixt and cache
  • module prefix added twice on expand
  • retrieve inputs of local rules from storage even if they are intermediate results

Documentation

  • add snakemake and reportplugins to req.txt to show all cli options

python-snakemake-storage-plugin-fs

1.0.4 (2024-04-25)

Bug Fixes

  • inherit ownership and permissions from "remote"/destination dir

python-snakemake-storage-plugin-gcs

1.0.0 (2024-04-26)

Bug Fixes

  • expect correct google cloud storage abbreviation in query scheme (gcs://)
  • fix directory support

Documentation

  • add intro, fix link

How to install

Updates may require up to 24 hours to propagate to mirrors. If the following command doesn't work, please retry later:

sudo dnf upgrade --refresh --advisory=FEDORA-2024-426625788f

This update's test gating status has been changed to 'waiting'.

a month ago

This update's test gating status has been changed to 'ignored'.

a month ago

This update has been submitted for testing by bodhi.

a month ago

This update has been pushed to testing.

a month ago

music edited this update.

a month ago

music edited this update.

New build(s):

  • snakemake-8.11.1-1.fc40

Removed build(s):

  • snakemake-8.11.0-1.fc40

Karma has been reset.

a month ago

This update has been submitted for testing by music.

a month ago

This update has been pushed to testing.

a month ago

music edited this update.

a month ago

music edited this update.

New build(s):

  • snakemake-8.11.3-1.fc40

Removed build(s):

  • snakemake-8.11.1-1.fc40

Karma has been reset.

a month ago

This update has been submitted for testing by music.

a month ago

This update has been pushed to testing.

a month ago

This update has been submitted for stable by bodhi.

a month ago

This update has been pushed to stable.

a month ago

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Metadata
Type
bugfix
Karma
0
Signed
Content Type
RPM
Test Gating
Settings
Unstable by Karma
-3
Stable by Karma
3
Stable by Time
7 days
Dates
submitted
a month ago
in testing
a month ago
in stable
a month ago
modified
a month ago
approved
a month ago
BZ#2276195 snakemake-8.11.0 is available
0
0
BZ#2277127 python-snakemake-storage-plugin-fs-1.0.4 is available
0
0
BZ#2277388 python-snakemake-storage-plugin-gcs-1.0.0 is available
0
0
BZ#2278140 snakemake-8.11.1 is available
0
0
BZ#2278739 snakemake-8.11.3 is available
0
0

Automated Test Results