stable

python-snakemake-executor-plugin-slurm-0.4.5-1.fc40, python-snakemake-executor-plugin-slurm-jobstep-0.2.1-1.fc40, & 6 more

FEDORA-2024-62ba68cc43 created by music 3 months ago for Fedora 40

snakemake

8.10.7 (2024-04-12)

Bug Fixes

  • expand error on modules with prefix
  • failure message in cleanup_metadata
  • handle async method in cleanup_storage_objects

8.10.6 (2024-04-04)

Bug Fixes

  • only constrain by --max-threads if threads of job are already known

8.10.5 (2024-04-04)

Bug Fixes

  • properly delete local copies of storage files after remote jobs
  • respect APPTAINER_CACHEDIR and allow env variables in --apptainer-prefix and --conda-prefix

8.10.4 (2024-03-27)

Documentation

  • fix links

8.10.3 (2024-03-27)

Documentation

  • mention maintainers

8.10.2 (2024-03-26)

Bug Fixes

  • remove default packages from conda envs
  • use base64 encoding for passing default resources args to jobs

8.10.1 (2024-03-26)

Bug Fixes

  • passing of --set-threads values to remote jobs
  • use base64 encoding when passing resources and threads to remote jobs (this solves issues with complex quoted resources)

8.10.0 (2024-03-22)

Features

  • expose ResourceSettings in TestWorkflowsBase

python-snakemake-interface-common

1.17.2 (2024-04-11)

Bug Fixes

  • Add missing name field to InvalidPluginExceptions
  • properly handle missing defaults in plugin settings

python-snakemake-interface-executor-plugins

9.1.1 (2024-04-12)

Bug Fixes

  • pass cores to remote jobs if they are set

9.1.0 (2024-03-26)

Features

  • add utils for encoding CLI args as base64

9.0.2 (2024-03-22)

Bug Fixes

  • quote list of args

9.0.1 (2024-03-21)

Bug Fixes

  • fix quoting of string arguments that are passed to spawned jobs

python-snakemake-interface-storage-plugins

3.2.2 (2024-04-17)

Bug Fixes

  • improved storage tests

3.2.1 (2024-04-16)

Bug Fixes

  • rm local dir before storage test

3.2.0 (2024-04-15)

Features

  • add test case for directories

python-snakemake-executor-plugin-slurm-jobspec

0.2.1 (2024-04-11)

Bug Fixes

  • cgroup confinement

0.2.0 (2024-04-06)

Features

  • improved debug messages

python-snakemake-executor-plugin-slurm

0.4.5 (2024-04-17)

Bug Fixes

  • fix path typo

0.4.4 (2024-04-15)

Miscellaneous Chores

  • release 0.4.4

0.4.3 (2024-04-12)

Bug Fixes

  • always create logdir before sbatch

python-snakemake-storage-plugin-fs

1.0.3 (2024-04-17)

Bug Fixes

  • fix query validation (used deprecated API)

1.0.2 (2024-04-16)

Miscellaneous Chores

  • release 1.0.2

1.0.1 (2024-04-16)

Bug Fixes

  • do not consider URL-like queries as valid

python-snakemake-storage-plugin-s3

0.2.11 (2024-04-17)

Bug Fixes

  • update to at least 3.2.2 of storage interface
  • fix errors when retrieving directories

How to install

Updates may require up to 24 hours to propagate to mirrors. If the following command doesn't work, please retry later:

sudo dnf upgrade --refresh --advisory=FEDORA-2024-62ba68cc43

This update's test gating status has been changed to 'waiting'.

3 months ago

This update's test gating status has been changed to 'ignored'.

3 months ago

This update has been submitted for testing by bodhi.

3 months ago

This update has been pushed to testing.

3 months ago

This update has been submitted for stable by bodhi.

There is an ongoing freeze; this will be pushed to stable after the freeze is over.

2 months ago

music edited this update.

2 months ago

music edited this update.

New build(s):

  • snakemake-8.10.6-2.fc40

Removed build(s):

  • snakemake-8.10.4-1.fc40

Karma has been reset.

2 months ago

This update has been submitted for testing by music.

2 months ago

music edited this update.

2 months ago

music edited this update.

New build(s):

  • python-snakemake-interface-common-1.17.2-1.fc40

Karma has been reset.

2 months ago

This update has been pushed to testing.

2 months ago

music edited this update.

2 months ago

music edited this update.

2 months ago

music edited this update.

New build(s):

  • python-snakemake-executor-plugin-slurm-0.4.3-1.fc40
  • python-snakemake-interface-executor-plugins-9.1.1-1.fc40
  • snakemake-8.10.7-1.fc40

Removed build(s):

  • python-snakemake-interface-executor-plugins-9.1.0-1.fc40
  • snakemake-8.10.6-2.fc40

Karma has been reset.

2 months ago

This update has been submitted for testing by music.

2 months ago

music edited this update.

2 months ago

This update has been pushed to testing.

a month ago

music edited this update.

a month ago

music edited this update.

New build(s):

  • python-snakemake-executor-plugin-slurm-0.4.4-1.fc40
  • python-snakemake-interface-storage-plugins-3.2.0-1.fc40
  • python-snakemake-executor-plugin-slurm-jobstep-0.2.1-1.fc40

Removed build(s):

  • python-snakemake-executor-plugin-slurm-0.4.3-1.fc40

Karma has been reset.

a month ago

This update has been submitted for testing by music.

a month ago

This update has been pushed to testing.

a month ago

music edited this update.

a month ago

music edited this update.

New build(s):

  • python-snakemake-storage-plugin-fs-1.0.2-1.fc40
  • python-snakemake-interface-storage-plugins-3.2.1-1.fc40

Removed build(s):

  • python-snakemake-interface-storage-plugins-3.2.0-1.fc40

Karma has been reset.

a month ago

This update has been submitted for testing by music.

a month ago

This update has been pushed to testing.

a month ago

music edited this update.

a month ago

music edited this update.

New build(s):

  • python-snakemake-executor-plugin-slurm-0.4.5-1.fc40

Removed build(s):

  • python-snakemake-executor-plugin-slurm-0.4.4-1.fc40

Karma has been reset.

a month ago

This update has been submitted for testing by music.

a month ago

music edited this update.

New build(s):

  • python-snakemake-interface-storage-plugins-3.2.2-1.fc40

Removed build(s):

  • python-snakemake-interface-storage-plugins-3.2.1-1.fc40

Karma has been reset.

a month ago

music edited this update.

New build(s):

  • python-snakemake-storage-plugin-s3-0.2.11-1.fc40
  • python-snakemake-storage-plugin-fs-1.0.3-1.fc40

Removed build(s):

  • python-snakemake-storage-plugin-fs-1.0.2-1.fc40

Karma has been reset.

a month ago

This update has been pushed to testing.

a month ago

This update has been submitted for stable by bodhi.

a month ago

This update has been pushed to stable.

a month ago

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BZ#2271076 snakemake-8.10.4 is available
0
0
BZ#2271077 python-snakemake-interface-executor-plugins-9.1.0 is available
0
0
BZ#2273536 snakemake-8.10.6 is available
0
0
BZ#2274659 python-snakemake-interface-common-1.17.2 is available
0
0
BZ#2274660 python-snakemake-executor-plugin-slurm-jobstep-0.2.1 is available
0
0
BZ#2274843 snakemake-8.10.7 is available
0
0
BZ#2274844 python-snakemake-interface-executor-plugins-9.1.1 is available
0
0
BZ#2274845 python-snakemake-executor-plugin-slurm-0.4.3 is available
0
0
BZ#2275104 python-snakemake-interface-storage-plugins-3.2.0 is available
0
0
BZ#2275105 python-snakemake-executor-plugin-slurm-0.4.4 is available
0
0
BZ#2275331 python-snakemake-storage-plugin-fs-1.0.2 is available
0
0
BZ#2275332 python-snakemake-interface-storage-plugins-3.2.1 is available
0
0
BZ#2275830 python-snakemake-interface-storage-plugins-3.2.2 is available
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0
BZ#2275831 python-snakemake-executor-plugin-slurm-0.4.5 is available
0
0
BZ#2275832 python-snakemake-storage-plugin-fs-1.0.3 is available
0
0
BZ#2275833 python-snakemake-storage-plugin-s3-0.2.11 is available
0
0

Automated Test Results