stable

python-snakemake-executor-plugin-slurm-0.8.0-1.fc40, python-snakemake-interface-executor-plugins-9.2.0-1.fc40, & 3 more

FEDORA-2024-7a367f4a2e created by music 10 months ago for Fedora 40

snakemake 8.16.0 (2024-07-09)

Features

  • added snakemake.script.snakemake for type hinting

Documentation

  • use note directive to align with the capabilities of the used theme

snakemake 8.15.2 (2024-07-05)

Bug Fixes

  • ensure that envvars in local storage prefix are not prematurely expanded by the shell
  • fix circular import

snakemake 8.15.1 (2024-07-04)

Bug Fixes

  • implement support for --touch on remote storage (if the storage provider supports it)

snakemake 8.15.0 (2024-07-04)

Features

  • add can_transfer_local_files to executor plugin interface

Bug Fixes

  • duplicate wildcards
  • handling of missing attributes in input/output/params lists that have been guarded against misuse (sort, index)
  • improve error message in case of invalid default storage prefix
  • include more context to syntax errors when rule parsing fails
  • parse f-string as-is from source
  • sanitize old local storage copies before evaluating params or resource functions
  • suppress printing of non-constant or uninteresting defaults in --help

Documentation

  • fix code block formatting
  • fix signature display

python-snakemake-storage-plugin-fs 1.0.5 (2024-07-04)

Bug Fixes

  • fix touch and retrieval of mtime for directories

python-snakemake-interface-storage-plugins 3.2.3 (2024-07-04)

Bug Fixes

  • fix name of touch operation attribute
  • return type of local_suffix

python-snakemake-interface-executor-plugins 9.2.0 (2024-07-04)

Features

  • add a default for the can_transfer_local_files interface
  • support for commas in wildcards

python-snakemake-executor-plugin-slurm 0.8.0 (2024-07-12)

Features

python-snakemake-executor-plugin-slurm 0.7.0 (2024-06-25)

Features

  • warning if run in job

Bug Fixes

  • null byte account guess

Documentation

  • added mini paragraph about Conda and Env Modules
  • added paragraphs about dynamic resource allocation
  • storage update

How to install

Updates may require up to 24 hours to propagate to mirrors. If the following command doesn't work, please retry later:

sudo dnf upgrade --refresh --advisory=FEDORA-2024-7a367f4a2e

This update's test gating status has been changed to 'waiting'.

10 months ago

This update's test gating status has been changed to 'ignored'.

10 months ago

music edited this update.

10 months ago

This update has been submitted for testing by bodhi.

10 months ago

music edited this update.

New build(s):

  • python-snakemake-interface-executor-plugins-9.2.0-1.fc40

Karma has been reset.

10 months ago

music edited this update.

New build(s):

  • python-snakemake-storage-plugin-fs-1.0.5-1.fc40
  • python-snakemake-interface-storage-plugins-3.2.3-1.fc40

Karma has been reset.

10 months ago

This update has been pushed to testing.

10 months ago

This update's test gating status has been changed to 'waiting'.

10 months ago

This update's test gating status has been changed to 'ignored'.

10 months ago

music edited this update.

New build(s):

  • snakemake-8.15.2-1.fc40

Karma has been reset.

10 months ago

This update has been submitted for testing by music.

10 months ago

This update has been pushed to testing.

10 months ago

music edited this update.

10 months ago

music edited this update.

New build(s):

  • snakemake-8.16.0-1.fc40

Removed build(s):

  • snakemake-8.15.2-1.fc40

Karma has been reset.

10 months ago

This update has been submitted for testing by music.

10 months ago

This update has been pushed to testing.

10 months ago

music edited this update.

10 months ago

music edited this update.

10 months ago

music edited this update.

New build(s):

  • python-snakemake-executor-plugin-slurm-0.8.0-1.fc40

Removed build(s):

  • python-snakemake-executor-plugin-slurm-0.7.0-1.fc40

Karma has been reset.

10 months ago

This update has been submitted for testing by music.

10 months ago

This update has been pushed to testing.

10 months ago

This update has been submitted for stable by bodhi.

10 months ago

This update has been pushed to stable.

10 months ago

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Metadata
Type
bugfix
Karma
0
Signed
Content Type
RPM
Test Gating
Autopush Settings
Unstable by Karma
-3
Stable by Karma
3
Stable by Time
7 days
Dates
submitted
10 months ago
in testing
10 months ago
in stable
10 months ago
modified
10 months ago
approved
10 months ago
BZ#2295729 python-snakemake-executor-plugin-slurm-0.7.0 is available
0
0
BZ#2295974 python-snakemake-interface-executor-plugins-9.2.0 is available
0
0
BZ#2295975 python-snakemake-interface-storage-plugins-3.2.3 is available
0
0
BZ#2295976 python-snakemake-storage-plugin-fs-1.0.5 is available
0
0
BZ#2295978 snakemake-8.15.2 is available
0
0
BZ#2297081 snakemake-8.16.0 is available
0
0
BZ#2298062 python-snakemake-executor-plugin-slurm-0.8.0 is available
0
0

Automated Test Results