This update contains the following changes.

coin-or-Alps 1.5.12:

• Update README.md
• Update generate_readme

coin-or-Cbc 2.10.12:

• Rebuild for nauty 2.8.9
• Update autotools
• Fix for mipstart columns out of range
• Copy mipStart_ when copying a CbcModel

coin-or-Cgl 0.60.9:

• Update autotools
• Add missing tolerances on tests in CglPreProcess.cpp

coin-or-Clp 1.17.10:

• Update autotools
• Resolve in ClpSolve if primal infeasible
• Fix possible buffer overflow in ClpSimplexOther

coin-or-CoinUtils 2.11.12:

• Update autotools

coin-or-Couenne:

• Rebuild for nauty 2.8.9

coin-or-HiGHS:

• Unbundle pdqsort and zstr more thoroughly
• Use zlib-ng directly instead of via the compatibility interface
• Run pytest in verbose mode

coin-or-Ipopt 3.14.15 and 3.14.16:

• Fixed include guard of IpGenAugSystemSolver.hpp (#756, by Christopher Wellons).
• Improved finding dependencies of linear solver libraries loaded at runtime on Windows (#755, by Yue Yang).
• Fixed load of linear solver libraries at runtime on Windows, which was broken for relative paths in 3.14.15 (#759, #760).

coin-or-OS:

• Rebuild for soplex 7.1.1

coin-or-Osi 0.108.11:

• Update autotools
• reinterpret_cast is not needed with NULL

coin-or-SYMPHONY 5.7.2:

• reset Clp termination code to "time limit reached" when it falsely returns "iteration limit reached" in dual simplex resolve (#199)

gap-pkg-nautytracesinterface:

• Rebuild for nauty 2.8.9
• Setting LC_ALL is no longer necessary

giac:

• Rebuild for nauty 2.8.9

Macaulay2:

• Rebuild for nauty 2.8.9

nauty 2.8.9:

• See https://mailman.anu.edu.au/pipermail/nauty/2024-August/000985.html for upstream changes
• The upstream changes alter the library soname: all consumers must be rebuilt
• Drop upstreamed or irrelevant patches: autoconf, autotoolization, includes, noreturn
• Drop tool-prefix patch; ship binaries with upstream names
• Add shared patch to link shared libraries with Fedora linker flags
• Use zlib-ng directly instead of via the compatibility interface
• Minor spec file simplifications

normaliz:

• Rebuild for nauty 2.8.9

papilo 2.3.1:

• See https://github.com/scipopt/papilo/blob/main/CHANGELOG for upstream changes
• Drop upstreamed test patch
• BR libatomic for architectures that need it

polymake 4.13:

• See https://polymake.org/doku.php/news/release_4_13 for upstream changes
• Drop upstreamed patches: lrslib7.3, Update-configure-for-perl-5.40

python-jupymake:

• Rebuild for polymake 4.13

scip 9.1.1:

• See https://github.com/scipopt/scip/blob/master/CHANGELOG for upstream changes
• Use zlib-ng directly instead of via the compatibility interface

soplex 7.1.1:

• See https://github.com/scipopt/soplex/blob/master/CHANGELOG for upstream changes
• Use zlib-ng directly instead of via the compatibility interface

zimpl 3.6.2:

• See https://github.com/scipopt/zimpl/blob/master/CHANGELOG for upstream changes
• Use zlib-ng directly instead of via the compatibility interface
• Temporarily disable one failing test on ppc64le

zstr:

• Use zlib-ng directly rather than via the compatibility interface