stable

python-irodsclient-3.2.0-2.fc43, python-pulp-3.3.0-2.fc43, & 7 more

FEDORA-2025-4ee6f0a639 created by music 4 months ago for Fedora 43

Snakemake 9.11.4 (2025-09-19)

Bug Fixes

  • Confusion with Overriding input After Snakemake Modularization
  • properly handle temp files in group jobs that are not needed outside of the group (do not upload them to storage and delete them early)

Snakemake 9.11.3 (2025-09-16)

Bug Fixes

  • logging refinements
  • use proper default and fallback LP solver in scheduler settings

Documentation

  • mention nodefaults for installation

Snakemake 9.11.2 (2025-09-09)

Bug Fixes

  • properly fall back to greedy scheduler in case of pulp/cbc errors

Snakemake 9.11.1 (2025-09-08)

Bug Fixes

  • invalid escape sequences in a doc string

Performance Improvements

  • for caching source files under potential race conditions, use rsync like file writing in order to improve performance on distributed filesystems like glusterfs

Snakemake 9.11.0 (2025-09-05)

Features

  • add landing page to the report containing custom metadata defined with a YTE yaml template
  • Issue a warning when unsupported characters are used in wildcard names

Bug Fixes

  • avoid checking output files in immediate-submit mode
  • clarify --keep-going flag help text to distinguish runtime vs DAG construction errors
  • enable docstring assignment in use rule ... with: block
  • fix missing attribute error in greedy scheduler settings when using touch, dryrun or immediate submit
  • only trigger script with CODE label
  • parser.py incorrectly parsing multiline f-strings
  • parsing ordinary yaml strings
  • remove temp files when using checkpoints
  • Restore python rules changes triggering reruns
  • unit testing
  • use queue_input_wait_time when updating queue input jobs

Documentation

  • output files within output directories is an error

Snakemake 9.10.1 (2025-09-01)

Performance Improvements

  • optimize persistence implementation (only write metadata once, reduce file operations for improving glusterfs performance)

Snakemake 9.10.0 (2025-08-19)

Features

  • migrate to scheduler plugin interface and scheduler plugins

Bug Fixes

  • don't rate limit jobs when touching
  • raise an error when different rules produce identical (temp) output
  • silence messages on module load

snakemake-storage-plugin-s3 0.3.6 (2025-09-11)

Bug Fixes

  • properly calculate dir size

snakemake-storage-plugin-s3 0.3.5 (2025-09-09)

Bug Fixes

  • norm the path part of a given query to not contain '..' (which is invalid for S3)

snakemake-executor-plugin-slurm 1.8.0 (2025-09-18)

Features

  • adding image for mastodon posts

Bug Fixes

  • account lookup / test in multicluster environment
  • quoting parameters

snakemake-executor-plugin-slurm 1.7.0 (2025-09-09)

Features

  • new flag for SLURM qos

snakemake-executor-plugin-kubernetes 0.5.1 (2025-09-10)

Bug Fixes

  • enable retrieving logs from terminated containers

snakemake-interface-storage-plugins 4.2.3 (2025-09-10)

Bug Fixes

  • test size method

PuLP 3.3.0

https://github.com/coin-or/pulp/compare/3.2.2...3.3.0

How to install

Updates may require up to 24 hours to propagate to mirrors. If the following command doesn't work, please retry later:

sudo dnf upgrade --refresh --advisory=FEDORA-2025-4ee6f0a639

This update's test gating status has been changed to 'waiting'.

4 months ago

This update's test gating status has been changed to 'ignored'.

4 months ago

music edited this update.

4 months ago

This update has been submitted for testing by bodhi.

4 months ago

This update has been pushed to testing.

3 months ago

music edited this update.

New build(s):

  • snakemake-9.10.1-1.fc43

Removed build(s):

  • snakemake-9.10.0-2.fc43

Karma has been reset.

3 months ago

This update has been submitted for testing by music.

3 months ago

This update has been pushed to testing.

3 months ago

This update has been submitted for stable by bodhi.

There is an ongoing freeze; this will be pushed to stable after the freeze is over.

3 months ago

music edited this update.

New build(s):

  • snakemake-9.11.0-1.fc43

Removed build(s):

  • snakemake-9.10.1-1.fc43

Karma has been reset.

3 months ago

This update has been submitted for testing by music.

3 months ago

This update has been pushed to testing.

3 months ago

music edited this update.

3 months ago

music edited this update.

3 months ago

music edited this update.

New build(s):

  • python-snakemake-executor-plugin-slurm-1.7.0-1.fc43
  • python-snakemake-storage-plugin-s3-0.3.5-1.fc43

Karma has been reset.

3 months ago

This update has been submitted for testing by music.

3 months ago

This update has been pushed to testing.

3 months ago

music edited this update.

New build(s):

  • snakemake-9.11.2-1.fc43

Removed build(s):

  • snakemake-9.11.0-1.fc43

Karma has been reset.

3 months ago

This update has been submitted for testing by music.

3 months ago

music edited this update.

New build(s):

  • python-snakemake-interface-scheduler-plugins-2.0.1-1.fc43

Removed build(s):

  • python-snakemake-interface-scheduler-plugins-2.0.0-1.fc43

Karma has been reset.

3 months ago

music edited this update.

New build(s):

  • python-snakemake-executor-plugin-kubernetes-0.5.1-1.fc43

Karma has been reset.

3 months ago

music edited this update.

3 months ago

music edited this update.

New build(s):

  • python-snakemake-interface-storage-plugins-4.2.3-1.fc43

Karma has been reset.

3 months ago

This update has been pushed to testing.

3 months ago

music edited this update.

3 months ago

music edited this update.

New build(s):

  • python-snakemake-storage-plugin-s3-0.3.6-1.fc43

Removed build(s):

  • python-snakemake-storage-plugin-s3-0.3.5-1.fc43

Karma has been reset.

3 months ago

This update has been submitted for testing by music.

3 months ago

This update has been pushed to testing.

3 months ago

music edited this update.

3 months ago

music edited this update.

3 months ago

music edited this update.

New build(s):

  • snakemake-9.11.3-1.fc43
  • python-pulp-3.3.0-1.fc43
  • python-snakemake-executor-plugin-slurm-1.8.0-1.fc43

Removed build(s):

  • python-snakemake-executor-plugin-slurm-1.7.0-1.fc43
  • snakemake-9.11.2-1.fc43

Karma has been reset.

3 months ago

This update has been submitted for testing by music.

3 months ago

This update has been pushed to testing.

3 months ago

music edited this update.

3 months ago

music edited this update.

New build(s):

  • python-snakemake-storage-plugin-xrootd-0.4.1-6.fc43

Karma has been reset.

3 months ago

This update has been submitted for testing by music.

3 months ago

music edited this update.

New build(s):

  • python-pulp-3.3.0-2.fc43
  • python-snakemake-storage-plugin-s3-0.3.6-2.fc43
  • python-snakemake-interface-storage-plugins-4.2.3-2.fc43
  • python-irodsclient-3.2.0-2.fc43
  • python-snakemake-executor-plugin-slurm-1.8.0-2.fc43
  • python-snakemake-interface-scheduler-plugins-2.0.1-2.fc43
  • python-snakemake-executor-plugin-kubernetes-0.5.1-2.fc43

Removed build(s):

  • python-pulp-3.3.0-1.fc43
  • python-snakemake-executor-plugin-kubernetes-0.5.1-1.fc43
  • python-snakemake-executor-plugin-slurm-1.8.0-1.fc43
  • python-snakemake-interface-scheduler-plugins-2.0.1-1.fc43
  • python-snakemake-interface-storage-plugins-4.2.3-1.fc43
  • python-snakemake-storage-plugin-s3-0.3.6-1.fc43

Karma has been reset.

3 months ago

music edited this update.

New build(s):

  • snakemake-9.11.4-1.fc43

Removed build(s):

  • snakemake-9.11.3-1.fc43

Karma has been reset.

3 months ago

This update has been pushed to testing.

3 months ago

This update can be pushed to stable now if the maintainer wishes

3 months ago

This update has been submitted for stable by music.

3 months ago

This update has been pushed to stable.

2 months ago

Please log in to add feedback.

Metadata
Type
bugfix
Karma
0
Signed
Content Type
RPM
Test Gating
Autopush Settings
Unstable by Karma
-3
Stable by Karma
disabled
Stable by Time
disabled
Dates
submitted
4 months ago
in testing
3 months ago
in stable
2 months ago
modified
3 months ago
approved
3 months ago
BZ#2391749 snakemake-9.10.0 is available
0
0
BZ#2392067 Review Request: python-snakemake-interface-scheduler-plugins - Scheduler plugin interface for snakemake
0
0
BZ#2392414 snakemake-9.10.1 is available
0
0
BZ#2393559 snakemake-9.11.0 is available
0
0
BZ#2394069 python-snakemake-interface-scheduler-plugins-2.0.1 is available
0
0
BZ#2394250 python-snakemake-executor-plugin-slurm-1.7.0 is available
0
0
BZ#2394251 python-snakemake-storage-plugin-s3-0.3.5 is available
0
0
BZ#2394368 python-snakemake-executor-plugin-kubernetes-0.5.1 is available
0
0
BZ#2394432 python-snakemake-interface-storage-plugins-4.2.3 is available
0
0
BZ#2394544 python-snakemake-storage-plugin-s3-0.3.6 is available
0
0
BZ#2396341 python-pulp-3.3.0 is available
0
0
BZ#2396346 snakemake-9.11.3 is available
0
0
BZ#2396347 python-snakemake-executor-plugin-slurm-1.8.0 is available
0
0
BZ#2396635 snakemake-9.11.4 is available
0
0
BZ#2396795 python-irodsclient: Please rebuild in Fedora 43
0
0
BZ#2396844 python-snakemake-storage-plugin-xrootd: Please rebuild in Fedora 43
0
0

Automated Test Results