Version 1.40, 2016-10-31
Small change to the way Bayesian credible intervals are calculated by bayesint(), concerning the treatment of widths of intervals between positions.
Fix bug in switchAlleles() so that it works with cross type "bcsft" (and will give an appropriate error message for unsupported cross types).
sim.cross gives a warning if model is specified but not used (this is the case for RILs, where we've not implemented the simulation of QTL effects)
plot.pxg (aka plotPXG) passes ... to plot(), so now you can control the y-axis limits via ylim.
Fixed a problem with column names of output of scantwopermhk.
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